SE3040253

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_390
  • Malus domestica
  • SE3040253
  • CACTA
  • MadC1
  • MDC012022.139:3796-4150
  • TTA
  • ACACTATGTTTGGATGAGAGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 G      ---------------AAAC       --      --AAAAG  -       --ATA     ACATGCACCAATTCCTTTGTTTGGATTCATAAACATAGAAATTTAGAATTTTCGCGTGGAAAAAAAAACTTGGAATTTGGGACCTCCAATTCCTAAGTTTAA
  ACACTATGTTTGGATGA AGAAAT                   TTGAAAT  TTGGAT       TC AGAATTT     AATTG                                                                                                      
  ||||||||||||||||| ||||||                   |||||||  ||||||       || |||||||     |||||                                                                                                       
  TGTGATACAAACCTACT TCTTTA                   AATTTTA  GACCTA       AG TCTTAAA     AAAAG                                                                                                      
AT                 -      AATTCTAATTATGCCTTAA       CT      AAATAAA  A       CACTT     AACAAACCAATTGGATTTTCTTTTTACCTTAACTTATACCTTAAACAATAAAAATTTGAGAGTTAGTATCTTTAACCCTTTTATGTGAATAAATGTACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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