Plant MITE

SE3020257

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_394
Malus domestica
SE3020257
Mutator
MadM53
MDC017742.270:32663-32879
CACTCAAGG
CTCAAGGGGATTTGGATCATCTCCTGAGTCCAAGGTGAGGATCCTCTTGATCAAGGAGTGTGGGCCATTGGATGAAAATCCAACGGTT

Secondary structure and sequence

TSD TIR

5'

3'

CA  CA  -            A   C         A                                 A                C    -------------ACAAAT    GG
  CT  AG GGGATTTGGATC TCT CTGAGTCCA GGTGAGGATCCTCTTGATCAAGGAGTGTGGGCC TTGGATGAAAATCCAA GGTT                   AGGG  
  ||  || |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||                   ||||   
  GA  TC CCCTAAACCTAG AGA GACTCGGGT CCACTCCTAGGAGGACTGGTTCCTCACACCCGG AACCTACTTTTAGGTT CCGA                   TCCC  
 G  AC  A            G   A         C                                 C                A    CATTAATAATATTAAAATT    TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020257

CACTCAAGGGGATTTGGATCATCTCCTGAGTCCAAGGTGAGGATCCTCTTGATCAAGGAGTGTGGGCCATTGGATGAAAATCCAACGGTTACAAATAGGGGGGTCCCTTTAAAATTATAATAATTACAGCCATTGGATTTTCATCCAACGGCCCACACTCCTTGGTCAGGAGGATCCTCACCCTGGGCTCAGAAGAGGATCCAAATCCCACTCAAGG

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