SE3020258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_395
  • Malus domestica
  • SE3020258
  • Mutator
  • MadM46
  • MDC011600.432:1893-2276
  • TTTTGCATA
  • TGCATAGGTTTTTAYCCAAAATGGTTRCTMAGATWTMCCTAACTCTTTACTTTGGTCCCTAAGATTTGAAATCAATAGAAATGGTCATTGAGATTGTCCACCATCAATCATTTTAGTCATTTGGTGAAGAATTATGTTAAATAAGGATCCAAATGACAAAACTACCCTCAATATAATAAACAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTT    -T        -AY           R  M    WTM C        TAC        CTA            A      A           A        C            A       G          -A   T     A    CC      C    C          --A  A    CA  AAGC
   TGCA  AGGTTTTT   CCAAAATGGTT CT AGAT   C TAACTCTT   TTTGGTCC   AGATTTGAAATC ATAGAA TGGTCATTGAG TTGTCCAC ATCAATCATTTT GTCATTT GTGAAGAATT  TGT AAATA GGAT  AAATGA AAAA TACCCTCAAT   TA TAAA  AT    
   ||||  ||||||||   ||||||||||| || ||||   | ||||||||   ||||||||   |||||||||||| |||||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||  ||| ||||| ||||  |||||| |||| ||||||||||   || ||||  ||     
   ACGT  TCCGAAAA   GGTTTTACCAG GA TCTA   G ATTGAGAA   AAACCAGG   TCTAAACTTTAG TATTTT ACTAGTAACTC AACAGGTG TAGTTAGTAAAA CAGTAAG TACTTTTTAG  GTA TTTAT CCTA  TTTACT TTTT ATGGGAGTTA   AT GTTT  TA    
 AT    TT        ATC           G  C    AAT T        -TA        ATC            C      A           A        T            C       G          AG   T     G    -T      A    T          AAA  A    AG  AAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End