Plant MITE

SE3020263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_400
Malus domestica
SE3020263
Mutator
MadM11
MDC012592.365:4087-4253
AAATCTCAA
GGGTGGTGCTATCTACACACCCATTTTTACCTCTCACACACCCTTCTCAATTTCCGACCGTCAGATC

Secondary structure and sequence

TSD TIR

5'

3'

AAATCTCAA            CTA       AT     C  C            -CTC     CC A    CA    GAATGAA
         GGGTGGTGCTAT   CACACCC  TTTTA CT TCACACACCCTT    AATTT  G CCGT  GATC       
         ||||||||||||   |||||||  ||||| || ||||||||||||    |||||  | ||||  ||||       T
         CCCATCATGATA   GTGTGGG  AGAAT GA AGTGTGTGGGAA    TTAAA  C GGTA  CTAG       
AACTCTAAA            AGC       GT     C  A            CAAT     AA A    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020263

AAATCTCAAGGGTGGTGCTATCTACACACCCATTTTTACCTCTCACACACCCTTCTCAATTTCCGACCGTCAGATCGAATGAATTGAAGAAGATCAATGGACAAAAATTTAACAAGGGTGTGTGAAAGCTAAGATGGGGTGTGCGAATAGTACTACCCAAATCTCAA

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