SE3020264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_401
  • Malus domestica
  • SE3020264
  • Mutator
  • MadM41
  • MDC008721.170:779-995
  • TTTTTCTTT
  • GGATTTGGATTCTCTTCTGAGCTAATGGAGAGGATCCTCCTCATCAAACATTGTGGACCATTGGATTTTCATCCAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTCTTT                              A          C          G      A         C   C    ----    -   TTATTATAACTT
         GGATTTGGATTCTCTTCTGAGCTAATGGAG GGATCCTCCT ATCAAACATT TGGACC TTGGATTTT ATC AACG    GTTA TAA            
         |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| ||| ||||    |||| |||             
         CCTAAACCTAGGAGAGGACTCGATTACCTC CCTAGGAGGA TGGTTTGTAA ACTTGG AATCTAAAA TAG TTGC    GTTT TCT            
TTTCTTTTT                              C          C          A      A         A   C    TGAT    G   TACCAGGGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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