Plant MITE

SE3020269

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_406
Malus domestica
SE3020269
Mutator
MadM8
MDC017552.293:3963-4138
TAAATAAAA
GGATAATGATAGGGATACTAAAATTTTAAACCAAATGATGTATCACCAATATGAAATGA

Secondary structure and sequence

TSD TIR

5'

3'

TAAATAAAA   -     A      TAC    A             GA    TC      --------   -AA    GCAC    ATCA  ACT
         GGA TAATG TAGGGA   TAAA TTTTAAACCAAAT  TGTA  ACCAAT        ATG   ATGA    ATTA    AC   
         ||| ||||| ||||||   |||| |||||||||||||  ||||  ||||||        |||   ||||    ||||    ||    
         TCT ATTAC ATCCTT   GTTT AAGATTTGGTTTA  ACAT  TGGTTG        TAC   TACT    TAAT    TG   
 AAAGTAAA   C     G      CTT    G             AA    -T      AATACACC   AAC    AACT    --AA  AAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020269

TAAATAAAAGGATAATGATAGGGATACTAAAATTTTAAACCAAATGATGTATCACCAATATGAAATGAGCACATTAATCAACACTTAAGTAATAATTCAATCATCAACATCCACATAAGTTGGTTTACAAAATTTGGTTTAGAAGTTTGTTCTTCCTAGCATTACTCTAAATGAAA

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