SE3020270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_407
  • Malus domestica
  • SE3020270
  • Mutator
  • MadM9
  • MDC002112.323:1123-1359
  • ATTAATGAA
  • TAATGAATGAGGATCTTGTACGGATCCTCTTTGTGAGATCTCGGGAATCCTCTAATCACATCCGTTCATCGTATATCGTGCAGTCAGAAATCATTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
   AT                 G A                 -  CT                                        A     ---AA     T   AATC   T      AA
     TAATGAATGAGGATCTT T CGGATCCTCTTTGTGAG AT  CGGGAATCCTCTAATCACATCCGTTCATCGTATATCGTGC GTCAG     ATCAT GTA    TTT TATTTA  
     ||||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||||     ||||| |||    ||| ||||||   
     ATTACTTGCTCCTAGGA A GTTTAGGAGAAACATTC TA  GCTCTTAGGAGGTTAGTGTAGGCAAGTAGCATGTAGCACG CGGTC     TAGTA CAT    AAA ATAAAT  
TAATT                 G G                 C  AT                                        C     AAAAG     -   -AAC   T      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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