SE3020271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_408
  • Malus domestica
  • SE3020271
  • Mutator
  • MadM8
  • MDC039855.8:630-813
  • TTATTGGAC
  • GGATCATGCTAGATGACCAAATTTTTAAACCAATTTGCAAACCAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTGGAC  ATC   -CT  AT  C                --   GC               TTAACAATAAAAAATAAGCACATTAATC
         GG   ATG   AG  GA CAAATTTTTAAACCAA  TTT  AAACCAAATGATGTG                            
         ||   |||   ||  || ||||||||||||||||  |||  |||||||||||||||                            A
         CC   TAC   TC  CT GTTTAAAAATTTGGTT  AAA  TTTGGTTTACTACAT                            
CAGGTTATT  CAT   TAT  CT  A                CA   AA               CTACTACTAACCTAATAATGAATTCACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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