Plant MITE

SE3020275

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_412
Malus domestica
SE3020275
Mutator
MadM11
MDC015895.41:3251-3415
TATATAGTC
TATATAGTCGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTTTCAATTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

         GTC        C                  T              C     C        -TCCATT    TTCTTCA
   TATATA   GGGGTGTG TATCCACACACCCCTTTT ACTTCTCACACACC TTTTT AATTTTTG       GATC       
   ||||||   |||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||       ||||       C
   ATATAT   CCCCACAC ATAGGTGTGTGGGGAAAA TGAAGAGTGTGTGG AAAAA TTAAAAGC       CTAG       
TTG      ---        T                  -              -     -        CAACAAC    CTTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020275

TATATAGTCGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTTTCAATTTTTGTCCATTGATCTTCTTCACTTCATTCGATCCAACAACCGAAAATTAAAAAGGTGTGTGAGAAGTAAAAGGGGTGTGTGGATATCACACCCCTATATAGTT

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