Plant MITE

SE3020276

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_413
Malus domestica
SE3020276
Mutator
MadM9
MDC020006.94:2717-2942
TATTTTATG
ATGGAATGAGGATCCTCTCTGAATTCTCTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTT              C      A           AA    TTCAGATATCCTTAAATCGTGTCTTTTCATTGTACATCGTACGGTCAGAAATCATTTTAAATATTTTT
      ATGGAATGAGGATC TCTCTG ATTCTCTTTGT  GGAT                                                                    
      |||||||||||||| |||||| |||||||||||  ||||                                                                     
      TATCTTACTCCTAG AGAGAC TAGGAGAAATA  AGTT                                                                    
GTATTT              T      C           GA    TAACACAGGCAAGTAACATGTAGCACGCTAGTCAAAAGCAATCCATGATAAGTATAAATTCAAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020276

TATTTTATGGAATGAGGATCCTCTCTGAATTCTCTTTGTAAGGATTTCAGATATCCTTAAATCGTGTCTTTTCATTGTACATCGTACGGTCAGAAATCATTTTAAATATTTTTATTTAAACTTAAATATGAATAGTACCTAACGAAAACTGATCGCACGATGTACAATGAACGGACACAATTTGAAGATAAAGAGGATCCAGAGATGATCCTCATTCTATTTTATG

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