SE3020277

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_414
  • Malus domestica
  • SE3020277
  • Mutator
  • MadM28
  • MDC012594.470:21601-22129
  • AATAATTTA
  • GGCTTAAATGTTATAATGGTTCATGTGTTTTAATCATTAGATCAATTTAGTGCATATGTTTTCAATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAATTTA                     C       T  A    TA A          G ATA       A     ATCAATTT  TTCTTGTCTTTATTTCCGTAAGCCAATTAAAAACATTTTCATTTAATTTTTGTGAAAAAAWTTATAAACTACTATAGACTTATTTATAGAATTATTTATTTGATTTGAAATATTTAAATATGAAATAAAATAAAAAATTAAAAGAAAAATTATTCTCCTCCTAACTTCCCRACCTC
         GGCTTAAATGTTATAATGGTT ATGTGTT TA TCAT  G TCAATTTAGT C   TGTTTTC ATTTG        GG                                                                                                                                                                                
         ||||||||||||||||||||| ||||||| || ||||  | |||||||||| |   ||||||| |||||        ||                                                                                                                                                                                C
         CCGAATTTACAGTATTACTAG TACACAA AT GGTA  C GGTTAAATCA G   ACAAAAG TAAAC        TC                                                                                                                                                                                
ATTTAATAA                     T       T  C    TA C          G GAC       C     CGATTAAA  GGTTAATTTCTATAAAGTAAGTTAGATACAATTTTTAAAGTATTCTTTTTAGTATTCTCTATATCAATGGGAAAAAKAAATGTTTAKACTTTTTATTGTGTRTATTCTCTATTTTGAAAGTTAWACTTTTTACTAATTCCATCACTGTATCTTTTCTTTCCCCCATTGCAATACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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