SE3020279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_416
  • Malus domestica
  • SE3020279
  • Mutator
  • MadM71
  • MDC019317.258:65-419
  • CTAAGATAT
  • GGGAGAGGATCCTCTTCGGAGCCGGTTCCACCGGATCCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAAGATAT                CG                 T     ACA  CCTCTTATTTCCTTGCACTTTGCGGCCCCCGGAGTCGGCGTCGTGCTCCCCCAGAGTGGGAGTCGGTTGAGGTTCAGAGTTGGTCGAAGTCGGCATCGTGGCCTCCCTGGAGCTAGTTATCGG
         GGGAGAGGATCCTCTT  GAGCCGGTTCCACCGGA CCTCC   TT                                                                                                                           
         ||||||||||||||||  ||||||||||||||||| |||||   ||                                                                                                                           C
         CCTTCTCCTAGGAGAG  CTCGGCCAAGGTGGTCT GGAGG   CT                                                                                                                           
TATGGAATC                AG                 C     --C  AAGAAGAGAAAGGAGAAGAAAGAGATGTCCAAAAGTCGGGGGCCTCAGCCACAGCACCGGAGAGATCTCGATCAATAGCCTTTTGAAGTTTTGGTGTGTCAGCCACTGTTGATGATGCTGCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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