SE3050282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_419
  • Malus domestica
  • SE3050282
  • PIF/harbinger
  • MadP2
  • MDC008927.253:15087-15496
  • TAA
  • AGAGCAATTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            -CCCAT     -  TTCCCCCT   AATC   --    CAATCCACCCTATTAAACAGTAACTGCCTTAAATGAATAGTAACTACCATTAATGAACAGTAATTGCCATTTACATCTCCACCCTTGGAACCCTCCCCCTGGCAATAAGCAATTAAAATAATAATTTTTGTTTGTTTGTTTAAATAATAAAAAACCCTAT
  AGAGCAATTCCA      GGAGC CC        GGC    CAA  TATT                                                                                                                                                                
  ||||||||||||      ||||| ||        |||    |||  ||||                                                                                                                                                                C
  TCTCGTTGAGGT      CGACC AC        GAG    CCG  GTCC                                                                                                                                                                
AA            CGCCTA     A  --------   ---C   CT    CCTCCTCTTTCCCGGACTCCCGGCCACCCTCGTCGAGGTCGCCCCTTCCCGGGCTCACTCCCACCCTCGGGCTCGCTTCCCCCCCACCCCTCAGCTGCCCGGACACCGGGCTCCCGAAACGTTATAAAATACAAAAAACACAGTCTCTCTCTCTCTCTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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