Plant MITE

SE3020287

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_424
Malus domestica
SE3020287
Mutator
MadM12
MDC001120.261:579-819
GTTTGTTTC
CGAACCAGGATCCTCTCCTGAGCAATTCCCTAGGGATRCTAGAGATCCCGCAATTTTGTCTGTTCATTTTATATCGTACGGTCAGTTTTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

GTTTGTTT                                  GA RC   A                         T        A       TTT     AGGTACTATTCATATT          A
        CGAACCAGGATCCTCTCCTGAGCAATTCCCTAGG  T  TAG GATCCCGCAATTTTGTCTGTTCATT TATATCGT CGGTCAG   TCGTT                TGAATTTTAA 
        ||||||||||||||||||||||||||||||||||  |  ||| ||||||||||||||||||||||||| |||||||| |||||||   |||||                |||||||||| A
        GCTTGGTCCTAGGAGAGGACTCGTTAAGGGATCC  A  ATC CTAGGGCGTTAAAATAGGCAAGTAG ATATAGCA GCCAGTC   AGTAA                ATTTAAAATT 
CTTTGTTT                                  AT GA   C                         C        C       TTT     ----------------          T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020287

GTTTGTTTCGAACCAGGATCCTCTCCTGAGCAATTCCCTAGGGATRCTAGAGATCCCGCAATTTTGTCTGTTCATTTTATATCGTACGGTCAGTTTTCGTTAGGTACTATTCATATTTGAATTTTAAAATTTAAAATTTAAATGATTTCTGACCGCACGATATACGATGAACGGATAAAATTGCGGGATCCCTAAGATACCTAGGGAATTGCTCAGGAGAGGATCCTGGTTCGTTTGTTTC

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