SE3050289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_426
  • Malus domestica
  • SE3050289
  • PIF/harbinger
  • MadP7
  • MDC025787.6:742-959
  • TTA
  • AGAGCTCGTTTGGATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  A              -------      AAAATGATTGAAAGCGCATTTGGTTCAAATGTTTTTTAAACCAATCCTTAGTTAAAATGCAAGTAAATTCTGGAATAGCA
  AG GCTCGTTTGGATGT       GCTTTT                                                                                
  || ||||||||||||||       ||||||                                                                                C
  TC CGAGCAAACCTACA       CTTTTT                                                                                
AT  C              CAAAAAT      TTACAAAAAGCCAAAGTTTTCGTGAACTTCACGAAAGACTTTCTTCGTGGTCAATACACGAAGAAGATCCTTCGTAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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