SE3020291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_428
  • Malus domestica
  • SE3020291
  • Mutator
  • MadM43
  • MDC010551.368:825-1051
  • ATTAAATAC
  • GGACTTGAATTGTCTGCCCTCCCATTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAATAC       A             C       KTGCTYTTCCC       C      T    A                      A        -------------      Y    AA
         GGACTTG ATTGTCTGCCCTC CATTTCG           GTGCCCT CTGTTT GTGT GTTACGGTTAAGCCACGTTAAC TTTTATAT             TGTTTT TTAT  
         ||||||| ||||||||||||| |||||||           ||||||| |||||| |||| |||||||||||||||||||||| ||||||||             |||||| ||||   
         CCTGAAC TAACAGATGGGAG GTAAAGT           CACGGGA GACAAA CACA TAGTGCCAATTTGGTGCAGTTG AAAATATA             ACAAAA AATA  
CATAAATTA       C             A       -----------       A      -    C                      C        ATGATAAAGAAAA      T    AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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