Plant MITE

SE3020292

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_429
Malus domestica
SE3020292
Mutator
MadM15
MDC001055.97:17758-17976
TATCATTAA
AGGAAAGGGATCCACTTCGGATACATTCKTTCTAATTCACCAAATCAGGGGATCCGTGCCGTTGAAATTTGARCAAACGGCTYAAGTTATTATAACTT

Secondary structure and sequence

TSD TIR

5'

3'

TATCATTA            CA        A    - K          C         G   CC                 R A       ----------------------Y      T
        AGGAAAGGGATC  CTTCGGAT CATT C TTCTAATTCA CAAATCAGG GAT  GTGCCGTTGAAATTTGA C AACGGCT                       AAGTTA 
        ||||||||||||  |||||||| |||| | |||||||||| ||||||||| |||  ||||||||||||||||| | |||||||                       |||||| T
        TCCTTTCTCTAG  GAAGTCTA GTAA G AGGATTAGGT GTTTAGTCC CTA  CACGGCAATTTTAAATT G TTGCCGA                       TTCAAT 
AATTACTA            TA        -    A G          T         R   CA                 A G       TGTTTTTYCTCRCGGGTGAAATT      A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020292

TATCATTAAGGAAAGGGATCCACTTCGGATACATTCKTTCTAATTCACCAAATCAGGGGATCCGTGCCGTTGAAATTTGARCAAACGGCTYAAGTTATTATAACTTTTAAAGTGGGCRCTCYTTTTTGTAGCCGTTGGATTAAATTTTAACGGCACACATCRCCTGATTTGTTGGATTAGGAGGAAATGATCTGAAGATGATCTCTTTCCTATCATTAA

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