SE3020299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_436
  • Malus domestica
  • SE3020299
  • Mutator
  • MadM28
  • MDC015381.190:6299-6718
  • ATGTTGGTT
  • TGGCTTAAATGTCAAAATGGTCCTTATGTTTTATACTATCGACCAATTAGGTCCTATGTTTTCAATTTGGCCAAATTAGTCATTCTGTTTACATCTGTTMGYTAACTCAAGACAATTTGTTAAAGGACCGTCAAAATTGACATGTGC

Secondary structure and sequence

TSD    TIR
5'



3'
ATGTTGGT                      C  A     T  A    C AC     A      -A                         AT C              M YT  C            G      G  C  C               -YARA      AGAGGACAAAAAC   ATTT    TACACCCACTAAACATATACAATGC
        TGGCTTAAATGTCAAAATGGTC TT TGTTT AT CTAT G  CAATT GGTCCT  TGTTTTCAATTTGGCCAAATTAGTC  T TGTTTACATCTGTT G  AA TCAAGACAATTT TTAAAG AC GT AAAATTGACATGTGC     CACATG             GCA    TATG                         
        |||||||||||||||||||||| || ||||| || |||| |  ||||| ||||||  |||||||||||||||||||||||||  | |||||||||||||| |  || |||||||||||| |||||| || || |||||||||||||||     ||||||             |||    ||||                          
        ACCGAATTTACAGTTTTACCAG AA ACAAG TG GATA C  GTTAA TCAGGG  ACAAAAGTTAAACCGGTTTAGTCAG  A ACAAATGTAGGTAA C  TT AGTTCTGTTAGA AATTTC TG TA TTTTAACTGTACATG     GTGTAT             TTT    AACT                         
  GGTTGT                      A  C     C  A    A CA     A      AC                         GT C              T GT  A            Y      -  T  A               ATTTA      ---CATGAGTTYA   ----    TGTYTCACAGTTAAAGATTTCTATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End