SE3020301

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_438
  • Malus domestica
  • SE3020301
  • Mutator
  • MadM11
  • MDC008909.169:6372-6535
  • TAAAGGAAG
  • AGGGGTGTGATATCCACACTCCTCATTTTACTTCTCACACATATTTTTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAGGA         A    C    -   T                   A    --      TCGG C  CA    AGATGAA
       AGGGGTGTG TATC ACAC TCC CATTTTACTTCTCACACAT TTTT  TAATTT    C GT  GATC       
       ||||||||| |||| |||| ||| ||||||||||||||||||| ||||  ||||||    | ||  ||||       T
       TCCCCACAC ATAG TGTG AGG GTAAAATGAAGAGTGTGTG GGAA  ATTAAA    G CA  CTAG       
AAGGAAA         A    A    T   -                   G    CT      TACA A  -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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