SE3020303

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_440
  • Malus domestica
  • SE3020303
  • Mutator
  • MadM46
  • MDC001949.350:7032-7419
  • TATTATTTT
  • GGCTTTTTATCTAAAATGGTCAATGAGATTTGTATAACTAATTATTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TATTATTTT         T T        CA                 AA        YTCA    A                 T    A     GT     C      A        T   A        CAAATCTCCA         -GA        AA    AA            -T  -T   ATCATTT
         GGCTTTTTA C AAAATGGT  ATGAGATTTGTATAACT  TTATTTTG    TTGA ATTTGAAATCGATATAA TGGT CCTGA  TTGTT ATCATC ATCATTTT GTC TTTTGTGA          TTAAATAAG   TAAAATGA  AAAA  TACCCTCAATTT  TG  CAA       
         ||||||||| | ||||||||  |||||||||||||||||  ||||||||    |||| ||||||||||||||||| |||| |||||  ||||| |||||| |||||||| ||| ||||||||          |||||||||   ||||||||  ||||  ||||||||||||  ||  |||        
         CCGAAAAAT G TTTTACCA  TACTCTAAACATATTGA  AATGAAAC    GACT TAAACTTTAGTTATGTT ACCA GGACT  AACAG TGGTAG TAGTAAAA CAG AAGACACT          AATTTATTT   ATTTTATT  TTTT  ATGGGAGTTAAA  AC  GTT       
TTTTATTAT         C Y        AG                 GG        CAYG    C                 C    G     AT     A      A        C   G        -TATCAATAC         ATA        -G    -G            TT  TT   AWATMGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End