SE3020304

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_441
  • Malus domestica
  • SE3020304
  • Mutator
  • MadM18
  • MDC015147.206:3632-3819
  • GTTTTATAA
  • TTATAAGAGAAATGCTTAAGAGACTCTTTCAAAATGGGGYTYTCYATAGATTTTCTGTCACCTCACAGTTTAACGTCCATTTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTT      ---          TAA              A     YTY  Y  A                  A    --A    -CC     --C   CC
   TTATAA   GAGAAATGCT   GAGACTCTTTCAAA TGGGG   TC AT GATTTTCTGTCACCTCAC GTTT   ACGT   ATTTT   ATG  
   ||||||   ||||||||||   |||||||||||||| |||||   || || |||||||||||||||||| ||||   ||||   |||||   |||   
   AATATT   CTCTTTACGA   CTCTGAGAGAGTTT ACTCT   GG TA TTGAGAGATGGTGGAGTG CAAA   TGTA   TAAAA   TAC  
         TTG          TTC              C     AAG  -  C                  C    AAC    TTA     TAT   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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