SE3020305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_442
  • Malus domestica
  • SE3020305
  • Mutator
  • MadM32
  • MDC002768.343:955-1143
  • ATTAATATA
  • ATTAATATAGAGTAATGATAGGAAGYCTAAATTTTTTAAATCAAAATGCAAATCAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
         ATA        A    A  YC                  -A       C          TCATAAAT    -AACAAGCAC      CGAC
   ATTAAT   GAGTAATG TAGG AG  TAAATTTTTTAAATCAAA  TGCAAAT AAATGATGTG        AAGA          GTTAAT    
   ||||||   |||||||| |||| ||  ||||||||||||||||||  ||||||| ||||||||||        ||||          ||||||    A
   TAATTA   CTCATTAC ATCC TC  GTTTAAAAAATTTGGTTT  ACGTTTG TTTACTACAC        TTCT          TAATTA    
ATA      ---        G    C  TA                  AA       A          ----CAAC    AKTAACCTAA      KTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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