SE3020306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_443
  • Malus domestica
  • SE3020306
  • Mutator
  • MadM11
  • MDC006757.216:27546-27709
  • AACAAGAAG
  • GGGGTGTGCTATCCACACACCCTTTTTTACTTCTCCCACACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AACAAGAA        C                          C       CTTG          T  -       TTCTTCA
        GGGGTGTG TATCCACACACCCTTTTTTACTTCTC CACACCC    TTAATTTTTG CC TTTGATC       
        |||||||| |||||||||||||||||||||||||| |||||||    |||||||||| || |||||||       A
        CCCTACAC ATAGGTGTGTGGGAAAAAATGAAGAG GTGTGGG    AATTAAAAGC GG AGGCTAG       
AAGAACAA        T                          A       --AA          C  C       CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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