Plant MITE

SE3020308

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_445
Malus domestica
SE3020308
Mutator
MadM43
MDC020464.406:3204-3431
AATAAAAGT
TGGAGGCAGATTCTCTGCCCTCCCACTTTCTGTGYCCTCATRTTTTGTGTGGGAACGGTTAAGTTACGTCAAYATTTTAATTTATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

AATAAAAG                 C       C  -      Y   -   --------RT         GA      A   T       Y      -------          RATAGAGA
        TGGAGGCAGATTCTCTG CCTCCCA TT TCTGTG CCT CAT          TTTGTGTGG  ACGGTT AGT ACGTCAA ATTTTA       ATTTATTTTT        
        ||||||||||||||||| ||||||| || |||||| ||| |||          |||||||||  |||||| ||| ||||||| ||||||       ||||||||||        T
        ACCTCCGTCTAAGAGAC GGAGGGT AA GGGCAT GGA GTA          AAACACACT  TGCCAA TCG TGCAGTT TAAAAT       TAAGTAAAAA        
TGAAAATA                 A       A  R      A   A   ACAGGAAGAC         AG      C   R       G      ATAATGA          TAGAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020308

AATAAAAGTGGAGGCAGATTCTCTGCCCTCCCACTTTCTGTGYCCTCATRTTTTGTGTGGGAACGGTTAAGTTACGTCAAYATTTTAATTTATTTTTRATAGAGATAATAAGATAAAAATGAATAGTAATATAAAATGTTGACGTRGCTCAACCGTGATCACACAAACAGAAGGACAATGAAGGATACGGGRAAATGGGAGGACAGAGAATCTGCCTCCAATAAAAGT

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