Plant MITE

SE3020309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_446
Malus domestica
SE3020309
Mutator
MadM11
MDC007681.179:30673-30836
TAATAATTG
GGGGTGTGCTATCCACACACCTCATTTTACTTCTCACACACC

Secondary structure and sequence

TSD TIR

5'

3'

TAATAATT        C                                 CCTTAA      A  T      ATCTTCTTCAA
        GGGGTGTG TATCCACACACCTCATTTTACTTCTCACACACC      TAATTT TG CCGTTG           
        |||||||| |||||||||||||||||||||||||||||||||      |||||| || ||||||            
        CCCCACAC ATAGGTGTGTGGAGTAAAATGAAGAGTGTGTGG      ATTAAA GC GGCAGC           
TTAATAAT        T                                 --AAAA      A  T      CTAACCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020309

TAATAATTGGGGTGTGCTATCCACACACCTCATTTTACTTCTCACACACCCCTTAATAATTTATGTCCGTTGATCTTCTTCAATTCATCCAATCCGACGGTCGAAAATTAAAAAGGTGTGTGAGAAGTAAAATGAGGTGTGTGGATATCACACCCCTAATAATT

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