Plant MITE

SE3020310

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_447
Malus domestica
SE3020310
Mutator
MadM43
MDC004745.81:6839-7077
GAGATTGAG
GATTGAGGGACAAGGATTGTCTGCCCTCCTAGTTGTGGTACCCTTCCATGCCCTCCTATTTTGTGCGGTCACGGTTAAGCCACGTCAATATTTTATATTTTTATTATTTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

 GA    GAG    AA                          A                                                           TTT   A   TT  TCTTA
   GATT   GGAC  GGATTGTCTGCCCTCCTAGTTGTGGT CCCTTCCATGCCCTCCTATTTTGTGCGGTCACGGTTAAGCCACGTCAATATTTTATATT   ATT TTT  TG     
   ||||   ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||  ||     T
   TTAG   CCTG  CCTAACAGACGGGAGGATCAACACCA GGGAAGGTACGGGAGGATAAAACATGCCAGTGCCAATTCGGTGCAGTTATAAAATATAA   TAA AAA  AC     
GAG    -AG    AA                          C                                                           --T   A   TT  TCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020310

GAGATTGAGGGACAAGGATTGTCTGCCCTCCTAGTTGTGGTACCCTTCCATGCCCTCCTATTTTGTGCGGTCACGGTTAAGCCACGTCAATATTTTATATTTTTATTATTTTTTGTCTTATTATCTCATTAAAAAATTAATATAAAATATTGACGTGGCTTAACCGTGACCGTACAAAATAGGAGGGCATGGAAGGGCACCACAACTAGGAGGGCAGACAATCCAAGTCCGAGATTGAG

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