SE3020311

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_448
  • Malus domestica
  • SE3020311
  • Mutator
  • MadM4
  • MDC006008.449:20768-20955
  • AATTTTTGA
  • GGGTAATGCTAGGGAAACTAAATTTGTAAACAAAATTTGCAAACTAAATTATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTTTGA                   A        A         - C         T     -------------TCGTC     AAA       GTTT
         GGGTAATGCTAGGGAAACT AATTTGTA ACAAAATTT G AAACTAAAT ATGTG                  AATAT   TGAGCAT    
         ||||||||||||||||||| |||||||| ||||||||| | ||||||||| |||||                  |||||   |||||||     
         CCCATTACGATCCCTTTGA TTAAACAT TGTTTTAAA C TTTGATTTA TGTAC                  TTATG   ATTCGTA    
AATTTTTAA                   A        C         A A         C     CTACAACTACTAACCTAA     --A       ACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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