SE3020316

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_453
  • Malus domestica
  • SE3020316
  • Mutator
  • MadM12
  • MDC040085.10:3412-3652
  • AACTTTAAA
  • GGAAAATGATCCTTGCCAGATCCTTTTTCTGGGGATCCTAGGGATCCTGCGATCGTGACTGTTCATTGTACATCGTGCGATCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AACTTTAAA      T          A          C                    C                           C      TTTTCGT      CTATTTATATTTAAT
         GGAAAA GATCCTTGCC GATCCTTTTT TGGGGATCCTAGGGATCCTG GATCGTGACTGTTCATTGTACATCGTG GATCAG       TAGGTA               
         |||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||       ||||||               T
         CCTTTT CTAGGAGTGG CTAGGAAAAG ACCCTTAGGATCCCTAGGGC TTAGCACTGACAAGTAGCATGTAGCAT CTAGTC       TAAAGT               
AAATTTCAA      C          C          A                    A                           A      --CTTAA      TTTAAATTTTAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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