Plant MITE

SE3020319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_456
Malus domestica
SE3020319
Mutator
MadM41
MDC002509.196:8289-8505
ATGTTAATC
GGAAGAGGATCCTCTCCTGAGCTCAGGATGGGAATCCTCTTGACCAAGAAATCCGGACCGTTCAAATTTAATTTAACGGTTGCAA

Secondary structure and sequence

TSD TIR

5'

3'

ATGTTAATC                         G      A             A      C   C                       G   TTATTATAA    T
         GGAAGAGGATCCTCTCCTGAGCTCA GATGGG ATCCTCTTGACCA GAAATC GGA CGTTCAAATTTAATTTAACGGTT CAA         CTTT 
         ||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||| |||         |||| A
         CCTTCTCCTAGGAGAGGACTCGAGT CTACTC TAGGAGGACTGGT CTTTAG CCT GCAAGTTTAAATTAGGTTGCCGA GTT         GAGA 
CTTATTGTA                         A      C             G      T   T                       G   TGTCCCCCA    G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020319

ATGTTAATCGGAAGAGGATCCTCTCCTGAGCTCAGGATGGGAATCCTCTTGACCAAGAAATCCGGACCGTTCAAATTTAATTTAACGGTTGCAATTATTATAACTTTTAGAGAGACCCCCTGTTTGGAGCCGTTGGATTAAATTTGAACGTTCCTGATTTCGTGGTCAGGAGGATCCTCATCATGAGCTCAGGAGAGGATCCTCTTCCATGTTATTC

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