SE3020321

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_458
  • Malus domestica
  • SE3020321
  • Mutator
  • MadM46
  • MDC027324.18:14207-14582
  • TAAAGATAA
  • AGGCTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAGATA        TAGCA     A    C                 C   C       CC     ATAC     ----------      T  A        C              C         AAT    -A          A   T            C      A     --AA    CA  A GC
        AGGCTTTT     AAAAT GTCT TGAGATTTGCATAACTC TCA TGTGGTC  TGAGA    AAGTT          GTCCCT AG TTGTCCAC ATCAATCATTTTGG CCTTCCATG   AGTT  TGTTAAATAA GAT ATAATGACAAAA TACCCT AATTT    TAAA  AT G  
        ||||||||     ||||| |||| ||||||||||||||||| ||| |||||||  |||||    |||||          |||||| || |||||||| |||||||||||||| |||||||||   ||||  |||||||||| ||| |||||||||||| |||||| |||||    ||||  || |   
        TCCGAAAA     TTTTA CAGG ACTCTAAACGTATTGAG AGT ATACCAG  ACTCT    TTTAG          CAGGGA TC AACAGGTG TAGTTAGTAAAACC GGAAGGTAC   TTAG  GTAATTTATT CTA TGTTACTGTTTT ATGGGA TTGAA    GTTT  TA C  
AATAGAAA        TTAAG     C    A                 A   A       AA     AAAC     CTATCTTAAC      C  A        T              A         CTT    AG          C   -            T      G     AACA    AG  A AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End