SE3020322

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_459
  • Malus domestica
  • SE3020322
  • Mutator
  • MadM15
  • MDC004412.259:3233-3449
  • TTATTTGAT
  • GGAAAGGGATCCTCTCTGGATCCCTTCCACCAAATCCTCTCCATCAACTAAACCGGGTTATTGAAATTTGATCTAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTGAT           C                           TC      C   ACC     A                      CAATC  GG   --C    T
         GGAAAGGGATC TCTCTGGATCCCTTCCACCAAATCCTC  CATCAA TAA   GGGTT TTGAAATTTGATCTAACGGTTA     AG  ATT   GCTT 
         ||||||||||| |||||||||||||||||||||||||||  |||||| |||   ||||| ||||||||||||||||||||||     ||  |||   |||| A
         CCTTTCCCTAG AGAGGCCTAGGGAAGGTGGTTTAGGAG  GTAGTT GTT   CCCGG AACTTTAAACTAGATTGCCAAT     TC  TAA   TGAA 
TAGTTTAAT           T                           TA      T   AAA     G                      ----T  AA   TAT    A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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