Plant MITE

SE3050323

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_460
Malus domestica
SE3050323
PIF/harbinger
MadP9
MDC004410.707:30375-30728
TAA
AGGCCTGGTTTGGTACTGAGGTGATTCTGAAAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

TA   C           C   G   A  C         T    ATKAAAAAAAYC    ------     TTTTGTGTTTGGTAAACATTCAGCTTCAGTTTTTTTTTCACAGTTTTGGGTGAAAAAAAGCAAAAAACACAAAGTTGCAAAACCCAGATTTGAAAAACCGGCTTTTTTTCACATTT
  AGG CTGGTTTGGTA TGA GTG TT TGAAAAAAG GAGT            TGGG      AGCTT                                                                                                                    
  ||| ||||||||||| ||| ||| || ||||||||| ||||            ||||      |||||                                                                                                                    G
  TCC GACCAAACCAT ACT CAC GA ACTTTTTTT TGAC            GAAG      CGACA                                                                                                                    
AA   C           A   A   -  A         T    ------------    ACAACA     TAACACTCTTATTTGTCGACACTTTATTTCGTCGTCTCACAAACCATTTGAAAAAACATTTTCACGAAAACTTTTTTTTTCGTCATAATATCACGAACCATTTGAAAATACATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050323

TAAGGCCTGGTTTGGTACTGAGGTGATTCTGAAAAAAGTGAGTATKAAAAAAAYCTGGGAGCTTTTTTGTGTTTGGTAAACATTCAGCTTCAGTTTTTTTTTCACAGTTTTGGGTGAAAAAAAGCAAAAAACACAAAGTTGCAAAACCCAGATTTGAAAAACCGGCTTTTTTTCACATTTGTTTTACATAAAAGTTTACCAAGCACTATAATACTGCTTTTTTTTTCAAAAGCACTTTTACAAAAAAGTTTACCAAACACTCTGCTGCTTTATTTCACAGCTGTTTATTCTCACAATACAGCACAACAGAAGCAGTTTTTTTTTCAAAGCACATCAATACCAAACCAGCCCTAA

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