SE3020325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_462
  • Malus domestica
  • SE3020325
  • Mutator
  • MadM11
  • MDC012174.167:2222-2386
  • AAAACTTTG
  • TTTGGGGTGTGCTATCCACACACCCCATTTTACTTCTCACACACCCCTTGATAATTTATATCCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAAC           C            C                    CC  GA      A  T      -   TTCTTCA
      TTTGGGGTGTG TATCCACACACC CATTTTACTTCTCACACACC  TT  TAATTT TA CCGTTG ATC       
      ||||||||||| |||||||||||| ||||||||||||||||||||  ||  |||||| || |||||| |||       A
      AAACCCCACAC ATAGGTGTGTGG GTAAAATGAAGAGTGTGTGG  AA  ATTAAA GT GGCAGC TAG       
ATTTCA           T            A                    --  AA      A  C      C   TTTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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