Plant MITE

SE3050326

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_463
Malus domestica
SE3050326
PIF/harbinger
MadP6
MDC010307.258:2207-2529
TTA
AGGTACCGTTTGGTATGTGGGACGGGACGGAACAGAGTGGGACGAGGCG

Secondary structure and sequence

TSD TIR

5'

3'

TT     C            ----               A          A    TTCC T     GTTTGGTGGGCCTAAAACGGGTGGAACGCGCTGTTCCACAGGACGAATTTTAGGTGAATTTTCGTTCCACCTCACCCCCTTGGAACGACTCGTTCCACG
  AGGTA CGTTTGGTATGT    GGGACGGGACGGAAC GAGTGGGACG GGCG    G CCCAC                                                                                                   
  ||||| ||||||||||||    ||||||||||||||| |||||||||| ||||    | |||||                                                                                                    
  TCCAT GCAAACCATACG    CCTTGCCCTGCCTTG CTTACCCTGC TTGC    T GCCCT                                                                                                   
AT     A            TCTG               C          C    --CC -     GTCCTGCRCTGCCTTGCCTCTCCCTCGTTTCTACGGGAGCCTACCTTTGTTCCTCCTTCTTCTTCCTCTGCCTCTCCAATATTAAAACACAAGGTACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050326

TTAGGTACCGTTTGGTATGTGGGACGGGACGGAACAGAGTGGGACGAGGCGTTCCGTCCCACGTTTGGTGGGCCTAAAACGGGTGGAACGCGCTGTTCCACAGGACGAATTTTAGGTGAATTTTCGTTCCACCTCACCCCCTTGGAACGACTCGTTCCACGTCCATGGAACACAAAATTATAACCTCTCCGTCTCCTTCTTCTTCCTCCTTGTTTCCATCCGAGGGCATCTTTGCTCCCTCTCCGTTCCGTCRCGTCCTGTCCCGTCCCGTTCCGTCCCATTCCGTTCCGTCCCGTTCCGTCTGCATACCAAACGATACCTTA

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