SE3020329

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_466
  • Malus domestica
  • SE3020329
  • Mutator
  • MadM41
  • MDC004320.105:1592-1808
  • CTGTCTTAT
  • GGATCAGGATCCTCTCCTGAGCAGATGGAGAGAATCCTCCTGACCAGGCCCATCGGGCCGTTCATTTTTTATCCAACGGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGTCTTAT                                A                                     -         C     TTATTACAACTTTAAA   GS
         GGATCAGGATCCTCTCCTGAGCAGATGGAGAG ATCCTCCTGACCAGGCCCATCGGGCCGTTCATTTTTT ATCCAACGG TATAA                AGG  
         |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||                |||   
         CCTGGTCCTAGGAGAGGACTCGTCTACCTCTC TAGGAGGACTGGTTCGGGTAGCTCGGCAAGTAAAAAA TAGGTTGCC ATGTT                TCC  
TATTCTGTC                                C                                     A         A     --------------TG   CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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