SE3050331

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_468
  • Malus domestica
  • SE3050331
  • PIF/harbinger
  • MadP7
  • MDC019144.163:10113-10351
  • TAA
  • AGGGCTCGTTTGTATGTGATTTTAAAATCACTTAAAGCGCTTTTGGTGAAAATGCTTTTGAAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            T     A         C   T    C C           A  C      -AA  AATCTTTAGTAAAAATCRAA   TATCATGAAAAAGCACTTTAAGTGCTTCCTGCAATAAAC
  AGGGCTCGTTTG ATGTG TTTTAAAAT ACT AAAG G TTTTGGTGAAA TG TTTTGA   CC                    ATG                                       
  |||||||||||| ||||| ||||||||| ||| |||| | ||||||||||| || ||||||   ||                    |||                                        
  TCCCGAGCAAAC TACAC AAAATTTTA TGA TTTC C AAAACCACTTT AC AAAACT   GG                    TTT                                       
AA            C     A         C   R    A T           A  T      CAA  --------------------   TTGTYAAATTCACGAAAGACTTTCTTCGTGGTCTATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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