SE3020333

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_470
  • Malus domestica
  • SE3020333
  • Mutator
  • MadM41
  • MDC002532.321:1143-1372
  • AGTAAAAAT
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
AGTAAAA  --  ATTTGGATCCTCTCCTGAGCTAATGGAGATGATCCTCCTGACCAGTTATCATGGGCCGTTGGATTTTTATCCAACAGCTACAAACAGGGGGTCCCTTTAAAMTTA
       AT  GG                                                                                                         
       ||  ||                                                                                                         T
       GG  AC                                                                                                         
     AA  CG  CATGGTGAGTACCTGCCTAAACCTAGGAGAGGACTCGATTACCTCCCCTAGGAGGACTGGTCAATAGTACTCGGCAACCTATTTTTAGGTTGCCGATATTAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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