SE3020334

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_471
  • Malus domestica
  • SE3020334
  • Mutator
  • MadM20
  • MDC013221.228:20311-20527
  • AAAAATAAG
  • GGATTTGGATCCTTTCCTGAGCTAATGGAGAGGATCCTCCTGACCCATAATCGTGGGCCGTTGAATTTTTATCCAACGGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATAAG                                                A   G          A                     TTATTATAACTTTAA    AC
         GGATTTGGATCCTTTCCTGAGCTAATGGAGAGGATCCTCCTGACCCAT ATC TGGGCCGTTG ATTTTTATCCAACGGCTATAA               AGGG  
         |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||               ||||   
         CCTAAACCTAGGAGAGGACTCGATTACCTCTCCTAGGAGGACTGGGTA TAG ATCCGGTAAC TAAAAATAGGTTGCCGATATT               TCCC  
GAATAAAAA                                                G   A          C                     -------------TG    CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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