SE3020342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_479
  • Malus domestica
  • SE3020342
  • Mutator
  • MadM43
  • MDC021406.94:5963-6190
  • GAGTTTGAG
  • GGAGATGGATTGTCTGCCCTCCCCTTCCCATATCCTCCCCATGCCCTCCTATTTTGTGCAGTCACGGTTAAGCCACGTCAACATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGTTTGAG                          C           C     C   CTA        A  C         C             TATATTAAT      ATAA
         GGAGATGGATTGTCTGCCCTCCCCTT CCATATCCTCC CATGC CTC   TTTTGTGC GT ACGGTTAAG CACGTCAACATTT         TTTTAT    
         |||||||||||||||||||||||||| ||||||||||| ||||| |||   |||||||| || ||||||||| |||||||||||||         ||||||    A
         CCTCTACCTAACAGACGGGAGGGGAA GGTATGGGAGG GTATG GAG   AAAACACG CA TGTCAATTC GTGCAGTTGTAAA         AGAATA    
GAGTTTGAG                          A           A     A   AAC        C  A         A             -CGAAAAAC      AWAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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