Plant MITE

SE3020348

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_485
Malus domestica
SE3020348
Mutator
MadM11
MDC015136.168:13222-13385
TTTTCTAAG
AAGGGGTGTGATATCCACACACCCTATTTTACTTCTCACACACCTTTTTAATTT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTCT          A          C                          --      TCGG    CG    GGATGAA
      AAGGGGTGTG TATCCACACA CCTATTTTACTTCTCACACACCTTTT  TAATTT    CCGT  GATC       
      |||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||    ||||  ||||       T
      TTCCCCACAC ATAGGTGTGT GGGTAAAATGAAGAGTGTGTGGGGAA  ATTAAG    GGCA  CTAG       
AATCTT          G          A                          CT      TACA    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020348

TTTTCTAAGGGGTGTGATATCCACACACCCTATTTTACTTCTCACACACCTTTTTAATTTTCGGCCGTCGGATCGGATGAATTGAAGAAGATCAACGGACATGAATTATCAAGGGGTGTGTGAGAAGTAAAATGGGATGTGTGGATAGCACACCCCTTTTCTAA

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