SE3050349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_486
  • Malus domestica
  • SE3050349
  • PIF/harbinger
  • MadP14
  • MDC006439.268:751-998
  • TAA
  • AGGGTTTGTTTGGTGGGCTGGTTGGGATAAATTATGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C   T      ---AAA       ------CAATTAAAATGAAC    GTCCA    -- TTGTTTGATGTGTCAAAATGTGAGATGATTAGAACTAGACGTGATAAGTTATG
  AGGGTTTGTTTGGTGGG TGG TGGGAT      TTATGAC                    TTGA     GTCA  A                                                     
  ||||||||||||||||| ||| ||||||      |||||||                    ||||     ||||  |                                                      
  TCCCGGGCAAACCACCC ATC ACTCTA      AATATTG                    TACA     TTCT  A                                                     
AA                 A   T      ACTCAG       TTCTAACCTAACCGTTCCTG    -----    GC CTGAACATTGAGTACATATTCCTATTCAATCTATTGGGTGATATAACACCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3