SE3020350

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_487
  • Malus domestica
  • SE3020350
  • Mutator
  • MadM43
  • MDC000411.458:5184-5421
  • TGTTTGCTT
  • GCTTGGAGGTGGATTGTCTGCCCTCCTATTTCCATACTCTTCCTATGCCCTCATGTGATGTGTGGTCACGGTTAAACCATGTCAATATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTTT  ---TT                    C                           A   GA                                      AATTTT    AGAAATAAT
     GC     GGAGGTGGATTGTCTGCCCT CTATTTCCATACTCTTCCTATGCCCTC TGT  TGTGTGGTCACGGTTAAACCATGTCAATATTTTATATT      TTAT         
     ||     |||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||      ||||         A
     CG     CCTCCACCTAACAGACGGGA GGTAAAGGTATGAGAGGGGTACGGGAG ACA  ACACACCAGTGCCAATTTGGTGCAGTTGTAAAATATAA      AATG         
   TT  TTTGT                    A                           G   -A                                      --GGAT    AAAAACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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