SE3020351

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_488
  • Malus domestica
  • SE3020351
  • Mutator
  • MadM76
  • MDC016993.180:30532-30738
  • ATTAAATAA
  • GGAATTGGATCCTCTCCAGGCAAACCTTCGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAATAA                 -AG           T  TTCTCAGAA   T                               A      ------------AC    GA
         GGAATTGGATCCTCTCC   GCAAACCTTCG GA         TCC CTAACACGGGTTGTTGGATCGAAATCTAATG CTACAA              AGAA  
         |||||||||||||||||   ||||||||||| ||         ||| ||||||||||||||||||||||||||||||| ||||||              ||||  T
         CCTTAACCTAGGAGAGG   CGTTTGGGAGC CT         AGG GATTGTGCCCGGCAACCTAGCTTTAGATTGT GATGTT              TCTT  
AATAAATTA                 CTK           C  ---------   T                               C      AATAATATTGAAAA    AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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