SE3020353

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_490
  • Malus domestica
  • SE3020353
  • Mutator
  • MadM43
  • MDC017382.94:11995-12180
  • AGGCAAAAG
  • GGACTAGGATTCTTTCCCTTCATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AGGCAAAAG   C                 A     CCATC     T   TA G          ----T  - TTTC CTTTCTATAAAAAATTAATAT
         GGA TAGGATTCTTTCCCTTC TTTTT     CCCTC TCT  C TTTTTTATTT     GT T    T                     
         ||| ||||||||||||||||| |||||     ||||| |||  | ||||||||||     || |    |                     A
         CCT ATCCTAAGAGAGGGGAG AAAAA     GGGAG AGA  G AGAGGATAAA     CA T    G                     
GAAAACAGA   C                 Y     ----A     M   AG Y          CTTGC  G ---- CCAATTCAGTGCAATTYTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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