Plant MITE

SE3050354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_491
Malus domestica
SE3050354
PIF/harbinger
MadP6
MDC003523.387:39078-39368
TAA
AGGTACCGTTTGGTACG

Secondary structure and sequence

TSD TIR

5'

3'

TA                 CAGACGGGA   A                CA     GA      GAC    A    GAAAAA       AGAAATTTTGTCATAAAATGTTATAAATTTGTGTTCCACGGATGTGGAACAAGTCGTTCCAGGAGGAA
  AGGTACCGTTTGGTACG         TGG ACGGGACGGGACGGAA  GGACG  ACAAAT   GTAA TATT      GATAAGG                                                                    
  |||||||||||||||||         ||| ||||||||||||||||  |||||  ||||||   |||| ||||      |||||||                                                                     
  TCCATGGCAAACCATGC         ACC TGCCCTGCCCTGCCTT  CCTGC  TCAGCA   AGGC AGGG      TGCAAAC                                                                    
AA                 ---------   C                AC     --      ---    -    ------       CACGCGGATTTTTGACACCTTGCCCAACAGGGTACTCTGCTTTAAACCGACTAAAAAACAAGGTGGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050354

TAAGGTACCGTTTGGTACGCAGACGGGATGGAACGGGACGGGACGGAACAGGACGGAACAAATGACGTAAATATTGAAAAAGATAAGGAGAAATTTTGTCATAAAATGTTATAAATTTGTGTTCCACGGATGTGGAACAAGTCGTTCCAGGAGGAAGAGGTGGAACAAAAAATCAGCCAAATTTCGTCTCATGGGACAACCCGTTCCACAGTTTTTAGGCGCACCAAACGTGGGACGGAACGACTCGTCCCATTCCGTCCCGTCCCGTCCCACGTACCAAACGGTACCTAA

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