SE3020357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_494
  • Malus domestica
  • SE3020357
  • Mutator
  • MadM24
  • MDC016767.488:4018-4255
  • GAAGTTGAT
  • GTTGATGAATCCGGAACCTCGCCTGATCCTCTTTGTGAGGATCTTGGGGATCCTTGAATCGTGTCCGTTCGTACATCGTGCGGTCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA      GAA   ----   A    GC T      C  T                 C T          C   ---            C      ------AAATCW  TTAAATATTTTTATTT
   GTTGAT   TCC    GGA CCTC  C GATCCT TT GTGAGGATCTTGGGGAT C TGAATCGTGT CGT   TCGTACATCGTG GGTCAG            TT                
   ||||||   |||    ||| ||||  | |||||| || ||||||||||||||||| | |||||||||| |||   |||||||||||| ||||||            ||                A
   CAGTTG   GGG    CCT GGAG  G CTAGGA AA CACTTCTAGAACCCTTA G ACTTAGCACA GCA   AGCATGTAGCAC CCAGTC            TG                
         -AA   TTGT   A    AA C      A  C                 Y C          A   AGT            A      AAAAACYATCCA  CKAAACACAAATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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