SE3020361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_498
  • Malus domestica
  • SE3020361
  • Mutator
  • MadM11
  • MDC019100.338:2738-2901
  • TAAAATTAG
  • TTAGGGGTGTGCTATCCACACACCACTTTTTACTTCTCACACATCCCTTGTTGATTTTTGTCCTTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAA           C            AC           CAC   T     G          T  -  T    TTCTTCA
     TTAGGGGTGTG TATCCACACACC  TTTTTACTTCT   ACA CCCTT TTGATTTTTG CC TT GATC       
     ||||||||||| ||||||||||||  |||||||||||   ||| ||||| |||||||||| || || ||||       A
     AATCCCCACAC ATAGGTGTGTGG  AAAAATGAAGA   TGT GGGAA AATTAAAAGC GG AG CTAG       
ATTAA           T            GA           ATT   -     -          C  C  C    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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