SE3050364

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_501
  • Malus domestica
  • SE3050364
  • PIF/harbinger
  • MadP5
  • MDC003555.452:16109-16556
  • TTA
  • AGGGGGCGTTTGTTTGCCCTCACTAAGTGGGACTGGACTA

Secondary structure and sequence

TSD    TIR
5'



3'
TT              T  -  TC    AG G           GAC     ----        - - --    ATACT  GTTTGTTCCATGCTGGGACTAACATTAATGAGACTAAAGGGGACTAGCATGGACAAAACCCTTCACTAAGAGGTCTTAGCGAGACCCCCCAATAACCATGGGACTAGCTAAGACTATCTTCTCTCGTCCTCGTCATGCTCAACAACCACTCCC
  AGGGGGCGTTTGTT GC CC  ACTA  T GGACTGGACTA   TGGAC    TAGCTGTT A G  TCCA     GT                                                                                                                                                         
  |||||||||||||| || ||  ||||  | |||||||||||   |||||    |||||||| | |  ||||     ||                                                                                                                                                          
  TCCCCCGCAAACAA CG GG  TGAT  A CCTGACCTGAT   CGAAG    TGATTCGA C G  CGAA     TC                                                                                                                                                         
AT              -  C  YC    AG G           ---     TTCC        C T AC    -----  TGATYTGATTCGACCTGATTGAATCACTTCGCAAACCACGTCACAACCTGATTCTTCGACCTATTATTGTTTAAGATTATAATATAATAAATTATATATTTAATAATTATAAAATAATACTAGATCCACTGGCCTCTACTGCCCCTCAGATAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End