Plant MITE

SE3020366

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_503
Malus domestica
SE3020366
Mutator
MadM43
MDC022739.234:11239-11475
ATAATTATT
ATAATTATTGGAGGTGGATTGTCTGCCCTTCCATTTCCATACTCTCCTCATTCCTCCTGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATT

Secondary structure and sequence

TSD TIR

5'

3'

         T                      C    C        CC    T -   C   -T        C                  C          TCTATTACT       TTTATT
 ATAATTAT GGAGGTGGATTGTCTGCCCTTC ATTT CATACTCT  TCAT C CTC TGT  TGTGTGGT ACGGTTAAGCCACGTCAA ATTTTATATT         TTTTTGT      
 |||||||| |||||||||||||||||||||| |||| ||||||||  |||| | ||| |||  |||||||| |||||||||||||||||| ||||||||||         |||||||       
 TATTAATA CCTCCACCTAACAGACGGGAGG TAAA GTATGAGA  GGTA G GAG ACA  ACACACCA TGCCAATTTGGTGCAGTT TAAAATATAA         AAAAATA      
T        -                      T    A        AA    T A   A   CT        A                  A          -------TT       TCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020366

ATAATTATTGGAGGTGGATTGTCTGCCCTTCCATTTCCATACTCTCCTCATTCCTCCTGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTTCTATTACTTTTTTGTTTTATTATTTCTATAAAAATTAATATAAAATATTGACGTGGTTTAACCGTAACCACACATCACAAGAGAGTATGGAAAGAGTATGAAAATTGGAGGGCAGACAATCCACCTCCATAATTATT

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