SE3020368

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_505
  • Malus domestica
  • SE3020368
  • Mutator
  • MadM11
  • MDC011791.227:44690-44852
  • AAAATGAAG
  • GGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACTCTTCTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATGAA        A               TT                   -C      TCGA    AG    GGATGAA
        GGGGTGTG TATCCACACACCCCA  TTACTTCTCACACACTCTT  TAATTT    CCGT  GATC       
        |||||||| |||||||||||||||  |||||||||||||||||||  ||||||    ||||  ||||       T
        CCCCACAC ATAGGTGTGTGGGGT  AATGAAGAGTGTGTGGGAA  ATTAAA    GGCA  CTAG       
AAGTAAAA        G               TT                   CA      TATA    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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